Associate Professor David Whiley
Theme Leader for Infectious diseases and Principal Research Fellow
UQ Centre for Clinical Research
Featured projects | Duration |
---|---|
Cytomegalovirus in Children receiving Haematopoietic Stem Cell Transplantation Children’s Hospital Foundation |
2020–2024 |
Book Chapters
Holt, Deborah C., Andersson, Patiyan, Buckley, Cameron, Whiley, David M. and Giffard, Philip M. (2019). Identification and discrimination of Chlamydia trachomatis ocular and urogenital strains and major phylogenetic lineages by CtGEM typing, a double-locus genotyping method. Chlamydia trachomatis. (pp. 87-122) edited by Amanda Claire Brown. New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-9694-0_8
Liang, Fang, Arora, Neetika, Zhang, Kang Liang, Yeh, David Che Cheng, Lai, Richard, Pearson, Darnley, Barnett, Graeme, Whiley, David, Sloots, Theo, Corrie, Simon R. and Barnard, Ross T. (2013). A new, multiplex, quantitative real-time polymerase chain reaction system for nucleic acid detection and quantification. Nucleic acid detection: methods and protocols. (pp. 51-68) edited by Dmitry M. Kolpashchikov and Yulia V. Gerasimova. New York, NY, United States: Humana Press. doi: 10.1007/978-1-62703-535-4_4
Goire, Namraj, Sloots, Theo P., Whiley, David M. and Nissen, Michael D. (2012). Protocol for the molecular detection of antibiotic resistance mechanisms in Neisseria gonorrhoeae. Diagnosis of sexually transmitted diseases. (pp. 319-328) edited by Colin R. MacKenzie and Birgit Henrich. Heidelberg, Germany: Springer. doi: 10.1007/978-1-61779-937-2_22
Bialasiewicz, Seweryn, Mackay, Ian M., Whiley, David M. and Sloots, Theo P. (2012). Protocol for the use of enzyme-linked hybridization assays for genital ulcer disease. Diagnosis of sexually transmitted diseases. (pp. 225-233) edited by Colin R. MacKenzie and Birgit Henrich. New York, NY, United States: Humana Press. doi: 10.1007/978-1-61779-937-2_14
Kidd, Timothy J., Whiley, David M., Bell, Scott C. and Grimwood, Keith (2011). Pseudomonas. Molecular detection of human bacterial pathogens. (pp. 1009-1021) edited by Dongyou Liu. Boca Raton, FL, USA: Taylor & Francis.
Garland, Suzanne M., Smith, David W., Tabrizi, Sepehr N. and Whiley, David M. (2010). Sexually transmitted infections. PCR for Clinical Microbiology: An Australian and International Perspective. (pp. 99-115) Dordrecht: Springer Netherlands. doi: 10.1007/978-90-481-9039-3_8
Bialasiewicz, Seweryn, Whiley, David M. and Sloots, Theo P. (2010). Malaria (P. falciparum, P. vivax, P. malariae, P. ovale). PCR for clinical microbiology : An Australian and international perspective. (pp. 373-377) edited by Margaret Schuller, Theo P. Sloots, Gregory S. James, Catriona L. Halliday and Ian W.J. Carter. Dordrecht ; London: Springer Publishing. doi: 10.1007/978-90-481-9039-3_64
Nissen, Michael D., Lambert, Stephen B., Whiley, David M. and Sloots, Theo P. (2010). Respiratory infections. PCR for clinical microbiology: an Australian and international perspective. (pp. 67-82) edited by Margret Schuller, Theo P. Sloots, Gregory S. James, Catriona L. Halliday and Ian W. J. Carter. Dordrecht, Netherlands : Springer. doi: 10.1007/978-90-481-9039-3_5
Whiley, David M. and Sloots, Theo P. (2010). Molecular amplification methods in diagnostic virology. Lennette's laboratory diagnosis of viral infections. (pp. 19-39) edited by Keith R. Jerome. New York, United States; Boca Raton, FL, United States: Informa Healthcare; CRC Press.
Whiley, David M. (2007). Clinical virology. Real-time PCR. (pp. 231-243) New York, NY USA: Taylor and Francis.
Whiley, D. M. and Sloots, T. P. (2006). Clinical Virology. Real-Time PCR. (pp. 231-276) edited by M. Tevfik Dorak. UK: Taylor & Francis.
Journal Articles
Brouwer, Stephan, Das, Swairindhree, Hayes, Andrew J., Bertolla, Olivia M., Davies, Mark R., Walker, Mark J., Whiley, David M., Irwin, Adam D. and Tickner, Jacob A. (2024). A rapid molecular detection tool for toxigenic M1UK Streptococcus pyogenes. The Journal of Infectious Diseases. doi: 10.1093/infdis/jiae437
van Hal, Sebastiaan J, Sherry, Norelle, Coombs, Geoff, Mowlaboccus, Shakeel, Whiley, David M and Lahra, Monica M (2024). Emergence of an extensively drug-resistant Neisseria gonorrhoeae clone. The Lancet Infectious Diseases, 24 (9), e547-e548. doi: 10.1016/s1473-3099(24)00486-9
Bryan, Emily R., McRae, Julia, Kumar, Vishnu, Trim, Logan K, Maidment, Toby I, Tickner, Jacob A D, Sweeney, Emma L, William, Elizabeth D, Whiley, David M and Beagley, Kenneth W (2024). A novel murine model mimicking male genital Neisseria species infection using Neisseria musculi. Biology of Reproduction, 111 (3), 613-624. doi: 10.1093/biolre/ioae100
Causer, Louise M., Ward, James, Smith, Kirsty, Saha, Amit, Andrewartha, Kelly, Wand, Handan, Hengel, Belinda, Badman, Steven G., Tangey, Annie, Matthews, Susan, Mak, Donna, Gunathilake, Manoji, Moore, Elizabeth, Speers, David, Persing, David, Anderson, David, Whiley, David, Maher, Lisa, Regan, David, Donovan, Basil, Fairley, Christopher, Kaldor, John, Shephard, Mark and Guy, Rebecca (2024). Clinical effectiveness and analytical quality of a national point-of-care testing network for sexually transmitted infections integrated into rural and remote primary care clinics in Australia, 2016–2022: an observational program evaluation. The Lancet Regional Health - Western Pacific, 48 101110, 101110. doi: 10.1016/j.lanwpc.2024.101110
Bainomugisa, Arnold, Pandey, Sushil, O'Connor, Bridget, Syrmis, Melanie, Whiley, David, Sintchenko, Vitali, Coin, Lachlan J.M., Marais, Ben J. and Coulter, Christopher (2024). Sustained transmission over two decades of a previously unrecognised MPT64 negative Mycobacterium tuberculosis strain in Queensland, Australia: a whole genome sequencing study. The Lancet Regional Health - Western Pacific, 47 101105, 101105. doi: 10.1016/j.lanwpc.2024.101105
Bonello, Michelle, Applegate, Tanya L., Badman, Steve, Bradshaw, Catriona S., Broom, Alex, Field, Paul, Hocking, Jane S., Huston, Wilhelmina M., Kong, Fabian, Murray, Gerald L., Mokany, Elisa, Pasricha, Shivani, Todd, Alison V., Whiley, David M., Wiseman, Virginia and Guy, Rebecca (2024). The AMR Hub: a public–private partnership to overcome barriers to commercialisation and deliver antimicrobial stewardship innovations. Microbiology Australia, 45 (2), 48-53. doi: 10.1071/MA24017
Adamson, Paul C, Hieu, Vu N, Nhung, Pham H, Whiley, DM and Chau, TM (2024). Ceftriaxone resistance in Neisseria gonorrhoeae associated with the penA-60.001 allele in Hanoi, Viet Nam. The Lancet Infectious Diseases, 24 (6), e351-e352. doi: 10.1016/s1473-3099(24)00230-5
Marshall, Helen, Ward, James, Wang, Bing, Andraweera, Prabha, McMillan, Mark, Flood, Louise, Bell, Charlotte, Sisnowski, Jana, Krause, Vicki, Webby, Rosalind, Childs, Emma, Gunathilake, Manoji, Egoroff, Natasha, Leong, Lex, Lawrence, Andrew, Baird, Rob, Freeman, Kevin, Menouhos, Dimitrios, Whiley, David M, Karnon, Jonathan, van Hal, Sebastian and Lahra, Monica M (2024). Comprehensive observational study evaluating the enduring effectiveness of 4CMenB, the meningococcal B vaccine against gonococcal infections in the Northern Territory and South Australia, Australia: study protocol. BMJ Open, 14 (5) e079144, 1-8. doi: 10.1136/bmjopen-2023-079144
Chai, Ming G., Tu, Quyen, Cotta, Menino O., Bauer, Michelle J., Balch, Ross, Okafor, Charles, Comans, Tracy, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Ungerer, Jacobus P. J., Mcwhinney, Brett C., Farkas, Andras, Paterson, David L., Clark, Julia E., Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Forde, Brian M., Harris, Patrick N. A., Schlapbach, Luregn J., Coin, Lachlan, Roberts, Jason A. and Irwin, Adam D. (2024). Correction: Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsis. Intensive Care Medicine, 50 (5), 810-810. doi: 10.1007/s00134-024-07393-9
Riddell, Michaela A., Vallely, Lisa M., Mengi, Alice, Badman, Steven G., Low, Nicola, Wand, Handan, Bolnga, John W., Babona, Delly, Mola, Glen D. L., Wiseman, Virginia, Kelly-Hanku, Angela, Homer, Caroline S. E., Morgan, Christopher, Luchters, Stanley, Whiley, David M., Robinson, Leanne J., Au, Lucy, Pukai-Gani, Irene, Laman, Moses, Kariwiga, Grace, Toliman, Pamela J., Batura, Neha, Tabrizi, Sepehr N., Rogerson, Stephen J., Garland, Suzanne M., Guy, Rebecca J., Peeling, Rosanna W., Pomat, William S., Kaldor, John M. and Vallely, Andrew J. B. (2024). Point-of-care testing and treatment of sexually transmitted and genital infections to improve birth outcomes in high-burden, low-resource settings (WANTAIM): a pragmatic cluster randomised crossover trial in Papua New Guinea. Lancet Global Health, 12 (4), e641-e651. doi: 10.1016/S2214-109X(24)00004-4
Seib, Kate L., Donovan, Basil, Thng, Caroline, Lewis, David A., McNulty, Anna, Fairley, Christopher K., Yeung, Barbara, Jin, Fengyi, Fraser, Doug, Bavinton, Benjamin R., Law, Matthew, Chen, Marcus Y., Chow, Eric P. F., Whiley, David M., Mackie, Brent, Jennings, Michael P., Jennison, Amy V., Lahra, Monica M. and Grulich, Andrew E. (2024). Multicentre double-blind randomised placebo-controlled trial evaluating the efficacy of the meningococcal B vaccine, 4CMenB (Bexsero), against Neisseria gonorrhoeae infection in men who have sex with men: the GoGoVax study protocol. BMJ Open, 14 (4) e081675, 1-9. doi: 10.1136/bmjopen-2023-081675
Bell, Sara F. E., Sweeney, Emma L., Kong, Fabian Y. S., Whiley, David M., Bradshaw, Catriona S. and Tickner, Jacob A. (2024). Response to the ASHM 2023 statement on the use of doxy-PEP in Australia: considerations and recommendations. Medical Journal of Australia, 220 (7), 356-360. doi: 10.5694/mja2.52255
Chai, Gene G., Tu, Quyen, Cotta, Menino O., Bauer, Michelle J., Balch, Ross, Okafor, Charles, Comans, Tracy, Kruger, Peter, Meyer, Jason, Shekar, Kiran, Brady, Kara, Fourie, Cheryl, Sharp, Natalie, Vlad, Luminita, Whiley, David, Ungerer, Jacobus P. J., McWhinney, Brett C., Farkas, Andras, Paterson, David L., Clark, Julia E., Hajkowicz, Krispin, Raman, Sainath, Bialasiewicz, Seweryn, Lipman, Jeffrey, Forde, Brian M., Harris, Patrick N. A., Schlapbach, Luregn J., Coin, Lachlan, Roberts, Jason A. and Irwin, Adam D. (2024). Achievement of therapeutic antibiotic exposures using Bayesian dosing software in critically unwell children and adults with sepsis. Intensive Care Medicine, 50 (4), 1-9. doi: 10.1007/s00134-024-07353-3
Ouk, V, Heng, L Say, Virak, M, Deng, S, Lahra, M M, Frankson, R, Kreisel, K, McDonald, R, Escher, M, Unemo, M, Wi, T, Maatouk, I, Penh, Phnom, Fensham, Vivian, Kersh, Ellen, Cavailler, Philippe, Mundade, Yamuna, Hal, Sebastiaan J van, Kundu, Ratan L, Hogan, Tiffany R, Whiley, David M, Izumi, Kiyohiko, Nishijima, Takeshi, EGASP Cambodia Working Group and Whiley, David (2024). High prevalence of ceftriaxone-resistant and XDR Neisseria gonorrhoeae in several cities of Cambodia, 2022–23: WHO Enhanced Gonococcal Antimicrobial Surveillance Programme (EGASP). JAC-Antimicrobial Resistance, 6 (2) dlae053. doi: 10.1093/jacamr/dlae053
Chew, Rusheng, Tozer, Sarah, Ulett, Kimberly, Paterson, David L, Whiley, David, Sloots, Theo, Fielding, David, Zappala, Christopher, Bashirzadeh, Farzad, Hundloe, Justin, Bletchley, Cheryl and Woods, Marion L (2024). Comparison of nasopharyngeal swab vs. lower respiratory tract specimen PCR for the diagnosis of Pneumocystis jirovecii pneumonia. Open Forum Infectious Diseases, 11 (3) ofae071, ofae071. doi: 10.1093/ofid/ofae071
Ertl, Nicole G., Anderson, Taylah K., Pardo, Carolyn J., Maidment, Toby I., Murray, Gerald L., Bradshaw, Catriona S., Whiley, David M. and Sweeney, Emma L. (2024). Concurrent parC and gyrA fluoroquinolone resistance mutations and associated strains in Mycoplasma genitalium in Queensland, Australia. Journal of Antimicrobial Chemotherapy, 79 (2), 467-469. doi: 10.1093/jac/dkad373
Trembizki, Ella, Anderson, Taylah, Whiley, David M. and Antonsson, Annika (2024). Investigating oral human papillomavirus co-infection with Neisseria gonorrhoeae and Chlamydia trachomatis. Epidemiology and Infection, 152 e8, 1-7. doi: 10.1017/s095026882300198x
Watson, Anna Louise, Woodford, John, Britton, Sumudu, Gupta, Rita, Whiley, David and McCarthy, Kate (2024). Determining Pneumocystis jirovecii Colonisation from Infection Using PCR-Based Diagnostics in HIV-Negative Individuals. Diagnostics, 14 (1) 114, 114. doi: 10.3390/diagnostics14010114
Bertagnolio, Silvia, Dobreva, Zlatina, Centner, Chad M, Olaru, Ioana Diana, Donà, Daniele, Burzo, Stefano, Huttner, Benedikt D, Chaillon, Antoine, Gebreselassie, Nebiat, Wi, Teodora, Hasso-Agopsowicz, Mateusz, Allegranzi, Benedetta, Sati, Hatim, Ivanovska, Verica, Kothari, Kavita U, Balkhy, Hanan H, Cassini, Alessandro, Hamers, Raph L, Weezenbeek, Kitty Van, Aanensen, David, Alanio, Alexandre, Alastruey-Izquierdo, Ana, Alemayehu, Tinsae, Al-Hasan, Majdi, Allegaert, Karel, Al-Maani, Amal Saif, Al-Salman, Jameela, Alshukairi, Abeer Nizar, Amir, Afreenish ... Zignol, Matteo (2024). WHO global research priorities for antimicrobial resistance in human health. The Lancet Microbe 100902, 100902. doi: 10.1016/S2666-5247(24)00134-4
Pryce, Todd M., Foti, Olivia R., Haygarth, Erin J. and Whiley, David M. (2023). Maximizing the Neisseria gonorrhoeae confirmatory rate and the genotypic detection of ciprofloxacin resistance for samples screened with cobas CT/NG. Journal of Clinical Microbiology, 62 (1) e0103923, 1-14. doi: 10.1128/jcm.01039-23
Lowry, Kym, Bauer, Michelle J., Buckley, Cameron, Wang, Claire, Bordin, Amanda, Badman, Steven, Harris, Patrick N.A., Mackay, Ian and Whiley, David (2023). Evaluation of Illumina® COVIDSeq™ as a Tool for Omicron SARS-CoV-2 Characterisation. Journal of Virological Methods, 322 114827, 1-5. doi: 10.1016/j.jviromet.2023.114827
Pollak, Nina, Rawle, Daniel J., Yan, Kexin, Buckley, Cameron, Le, Thuy, Wang, Claire Y., Ertl, Nicole G., Van Huyssteen, Karla, Crkvencic, Nicole, Hashmi, Misha, Lyons, Russell E., Whiley, David M., Suhrbier, Andreas and Macdonald, Joanne (2023). Rapid inactivation and sample preparation for SARS-CoV-2 PCR-based diagnostics using TNA-Cifer reagent E. Frontiers in Virology, 14 1238542, 1-12. doi: 10.3389/fmicb.2023.1238542
van Hal, S. J., Whiley, D. M., Le, T., Ray, S., Kundu, R. L., Kerr, E. and Lahra, M. M. (2023). Rapid expansion of Neisseria gonorrhoeae ST7827 clone in Australia, with variable ceftriaxone phenotype unexplained by genotype. Journal of Antimicrobial Chemotherapy, 78 (9), 2203-2208. doi: 10.1093/jac/dkad221
Hume, Jocelyn, Lowry, Kym, Whiley, David M., Irwin, Adam D., Bletchly, Cheryl and Sweeney, Emma L. (2023). Application of the ViroKey® SQ FLEX assay for detection of cytomegalovirus antiviral resistance. Journal of Clinical Virology, 167 105556, 1-8. doi: 10.1016/j.jcv.2023.105556
Murray, Gerald L, Plummer, Erica L, Bodiyabadu, Kaveesha, Vodstrcil, Lenka A, Huaman, Jose L, Danielewski, Jennifer A, Chua, Teck Phui, Machalek, Dorothy A, Garland, Suzanne, Doyle, Michelle, Sweeney, Emma L, Whiley, David M and Bradshaw, Catriona S (2023). gyrA mutations in Mycoplasma genitalium and their contribution to moxifloxacin failure: time for the next generation of resistance-guided therapy. Clinical Infectious Diseases, 76 (12), 2187-2195. doi: 10.1093/cid/ciad057
Li, Junrong, Howard, Christopher B., Dey, Shuvashis, Lowry, Kym, Whiley, David M., Puttick, Simon, Rose, Stephen, Lobb, Richard J., Wuethrich, Alain, Edwardraja, Selvakumar and Trau, Matt (2023). A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments. Nature Nanotechnology, 18 (10), 1222-1229. doi: 10.1038/s41565-023-01415-1
Bell, Sara F. E., Ware, Robert S., Lewis, David A., Lahra, Monica M. and Whiley, David M. (2023). Antimicrobial susceptibility assays for Neisseria gonorrhoeae: a proof-of-principle population-based retrospective analysis. The Lancet Microbe, 4 (7), e544-e551. doi: 10.1016/s2666-5247(23)00071-x
Whiley, David M., Tickner, Jacob A., Kundu, Ratan L., Hogan, Tiffany R., van Hal, Sebastiaan J. and Lahra, Monica M. (2023). Selection of Neisseria gonorrhoeae ceftriaxone resistance using doxycycline post-exposure prophylaxis. The Lancet Infectious Diseases, 23 (8), e268-e269. doi: 10.1016/s1473-3099(23)00359-6
Hume, Jocelyn, Sweeney, Emma L., Lowry, Kym, Fraser, Chris, Clark, Julia E., Whiley, David M. and Irwin, Adam D. (2023). Cytomegalovirus in children undergoing haematopoietic stem cell transplantation: a diagnostic and therapeutic approach to antiviral resistance. Frontiers in Pediatrics, 11 1180392, 1180392. doi: 10.3389/fped.2023.1180392
Tickner, Jacob A, Trembizki, Ella and Whiley, David M (2023). Neisseria gonorrhoeae ciprofloxacin susceptibility testing and gyrA targets. The Lancet Microbe, 4 (8), e574-E574. doi: 10.1016/s2666-5247(23)00149-0
Ertl, Nicole G., Irwin, Adam D., Macdonald, Joanne, Bauer, Michelle J., Wang, Claire Y. T., Harris, Patrick N. A., Heney, Claire, Zowawi, Hosam M. and Whiley, David M. (2023). Rapid molecular detection of CMY-2, and CTX-M group 1 and 9 variants via recombinase polymerase amplification. JAC - Antimicrobial Resistance, 5 (2) dlad023, dlad023. doi: 10.1093/jacamr/dlad023
Al Suwayyid, Barakat A., Haese, Ethan C., Mowlaboccus, Shakeel, Pearson, Julie C., Whiley, David M., Armstrong, Paul K., Giele, Carolien M., Mak, Donna B., Bastian, Lisa, Wise, Michael J., Coombs, Geoffrey W. and Kahler, Charlene M. (2023). Travel-associated lineages and unique endemic antimicrobial-susceptible lineages of Neisseria gonorrhoeae predominate in Western Australia. Microbial Genomics, 9 (3) 000969. doi: 10.1099/mgen.0.000969
McHugh, Lisa, Dyda, Amalie, Guglielmino, Christine, Buckley, Cameron, Lau, Colleen L., Jennison, Amy V., Regan, David G., Wood, James, Whiley, David and Trembizki, Ella (2023). The changing epidemiology of Neisseria gonorrhoeae genogroups and antimicrobial resistance in Queensland, Australia, 2010–15: a case series analysis of unique Neisseria gonorrhoeae isolates. Sexual Health, 20 (4), 296-302. doi: 10.1071/sh22118
Divithotewala, Chandima, Sweeney, Emma L., Burke, Andrew, Graves, Bianca, Stewart, Adam, Whiley, David, Heney, Claire, Hopkins, Peter M. and Chambers, Daniel C. (2023). Mycoplasma hominis and Ureaplasma urealyticum infections in the immediate post-lung transplant period: A case series and literature review. Transplant Infectious Disease, 25 (3) e14058, 1-7. doi: 10.1111/tid.14058
Alharbi, Bushra, Jennison, Amy V., Hicks, Vicki, Whiley, David M, Sweeney, Emma and Trembizki, Ella (2023). Decreased Neisseria gonorrhoeae genotypic diversity following COVID-19 restrictions in Queensland, Australia 2020. Epidemiology and Infection, 151 e67, 1-8. doi: 10.1017/S0950268823000523
Salmerón, P., Buckley, C., Arando, M., Alcoceba, E., Romero, B., Clavo, P., Whiley, D. and Serra-Pladevall, J. (2023). Genome-based epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in Spain: a prospective multicentre study. Journal of the European Academy of Dermatology and Venereology, 37 (12), 2575-2582. doi: 10.1111/jdv.19458
El-Heneidy, Asmaa, Cheung, Catherine, Lambert, Stephen B., Wang, Claire Y. T., Whiley, David M., Sly, Peter D., Ware, Robert S. and Grimwood, Keith (2022). Histo-blood group antigens and rotavirus vaccine virus shedding in Australian infants. Pathology, 54 (7), 928-934. doi: 10.1016/j.pathol.2022.04.006
Bauer, Michelle J., Peri, Anna Maria, Lüftinger, Lukas, Beisken, Stephan, Bergh, Haakon, Forde, Brian M., Buckley, Cameron, Cuddihy, Thom, Tan, Patrice, Paterson, David L., Whiley, David M. and Harris, Patrick N. A. (2022). Optimized method for bacterial nucleic acid extraction from positive blood culture broth for whole-genome sequencing, resistance phenotype prediction, and downstream molecular applications. Journal of Clinical Microbiology, 60 (11) e01012-22, 1-11. doi: 10.1128/jcm.01012-22
Biggs, Sharon L., Jennison, Amy V., Bergh, Haakon, Graham, Rikki, Nimmo, Graeme and Whiley, David (2022). Limited evidence of patient-to-patient transmission of Staphylococcus aureus strains between children with cystic fibrosis, Queensland, Australia. PLoS One, 17 (10) e0275256, 1-18. doi: 10.1371/journal.pone.0275256
Alharbi, Bushra, Cozzolino, Daniel, Sikulu-Lord, Maggy, Whiley, David and Trembizki, Ella (2022). Near-infrared spectroscopy as a feasible method for the differentiation of Neisseria gonorrhoeae from Neisseria commensals and antimicrobial resistant from susceptible gonococcal strains. Journal of Microbiological Methods, 201 106576, 106576. doi: 10.1016/j.mimet.2022.106576
Sweeney, Emma L, Bradshaw, Catriona S, Murray, Gerald L and Whiley, David M (2022). Can ParC Ser83Ile status predict fluoroquinolone efficacy in Mycoplasma genitalium infection? – Authors’ reply. The Lancet Infectious Diseases, 22 (9), 1274-1275. doi: 10.1016/S1473-3099(22)00446-7
Vodstrcil, Lenka A., Plummer, Erica L., Doyle, Michelle, Murray, Gerald L., Bodiyabadu, Kaveesha, Jensen, Jorgen S., Whiley, David, Sweeney, Emma, Williamson, Deborah A., Chow, Eric P. F., Fairley, Christopher K. and Bradshaw, Catriona S. (2022). Combination Therapy for Mycoplasma genitalium, and New Insights Into the Utility of parC Mutant Detection to Improve Cure. Clinical Infectious Diseases, 75 (5), 813-823. doi: 10.1093/cid/ciab1058
Lowry, Kym, Wang, Claire, Bordin, Amanda, Buckley, Cameron, Badman, Steven, Harris, Patrick, Mackay, Ian and Whiley, David (2022). SARS-CoV-2 RT-PCR to screen for B.1.617.2 (Delta) Variant of Concern. Diagnostics, 12 (9) 2056, 1-7. doi: 10.3390/diagnostics12092056
Jonduo, Marinjho E., Vallely, Andrew J., Whiley, David M., Riddell, Michaela A., Pomat, William, Low, Nicola and Sweeney, Emma L. (2022). Mycoplasma genitalium macrolide and fluoroquinolone resistance in pregnant women in Papua New Guinea. Sexually Transmitted Infections, 99 (1) 055552, 71-72. doi: 10.1136/sextrans-2022-055552
Guglielmino, Christine J. D., Sandhu, Sumeet, Lau, Colleen L., Buckely, Cameron, Trembizki, Ella, Whiley, David M. and Jennison, Amy V. (2022). Molecular characterisation of Neisseria gonorrhoeae associated with disseminated gonococcal infections in Queensland, Australia: a retrospective surveillance study. BMJ Open, 12 (8) e061040, e061040. doi: 10.1136/bmjopen-2022-061040
Tickner, Jacob A., Lahra, Monica M. and Whiley, David M. (2022). The need for a commercial test using the penA60 allele to identify ceftriaxone-resistant Neisseria gonorrhoeae. The Lancet Infectious Diseases, 22 (9), 1271-1272. doi: 10.1016/s1473-3099(22)00520-5
Ayfan, Abdulrahman K. S., Macdonald, Joanne, Irwin, Adam D., Zowawi, Hosam M., Forde, Brian M., Paterson, David L., Lahra, Monica M. and Whiley, David M. (2022). Proof-of-concept, rapid, instrument-free molecular detection of Neisseria gonorrhoeae and ciprofloxacin susceptibility. Journal of Antimicrobial Chemotherapy, 77 (11), 2933-2936. doi: 10.1093/jac/dkac242
Zolfaghari, Pouria, Emamie, Amir Darb, Rajabpour, Mohammadreza, Zarei, Atefe, Whiley, David M., Pourmand, Mohammad Reza and Pourmand, Gholamreza (2022). Antimicrobial susceptibility testing and molecular characterization of Neisseria gonorrhoeae in Tehran, Iran. International Journal of STD and AIDS, 33 (7), 660-665. doi: 10.1177/09564624221091746
Sweeney, Emma L., Whiley, David M., Murray, Gerald L. and Bradshaw, Catriona S. (2022). Mycoplasma genitalium: enhanced management using expanded resistance-guided treatment strategies. Sexual Health, 19 (4), 248-254. doi: 10.1071/sh22012
Sweeney, Emma L., Lowry, Kym, Seel, Mandy, Rahimi, Frashta, Langton-Lockton, Julian, Bletchly, Cheryl, Nimmo, Graeme R. and Whiley, David M. (2022). Two Treponema pallidum strains account for the majority of syphilis infections, including among females, in Queensland, Australia. Communicable Diseases Intelligence, 46. doi: 10.33321/cdi.2022.46.26
Medland, Nicholas A., Zhang, Ye, Gunaratnam, Praveena, Lewis, David A., Donovan, Basil, Whiley, David M., Guy, Rebecca J. and Kaldor, John M. (2022). Surveillance systems to monitor antimicrobial resistance in Neisseria gonorrhoeae: a global, systematic review, 1 January 2012 to 27 September 2020. Eurosurveillance, 27 (18) 2100917, 25-36. doi: 10.2807/1560-7917.es.2022.27.18.2100917
Murray, Gerald L., Bodiyabadu, Kaveesha, Vodstrcil, Lenka A., Machalek, Dorothy A., Danielewski, Jennifer, Plummer, Erica L., Garland, Suzanne M., Whiley, David M., Sweeney, Emma L. and Bradshaw, Catriona S. (2022). parC Variants in Mycoplasma genitalium: trends over time and association with moxifloxacin failure. Antimicrobial Agents and Chemotherapy, 66 (5) e0027822, e0027822. doi: 10.1128/aac.00278-22
Bell, Sara F.E., Lambert, Stephen B., Jennison, Amy V., Guglielmino, Christine Jd, Ware, Robert S. and Whiley, David M. (2022). HIV risk and gonococcal genotype: Opportunities to improve passive surveillance for prompt identification of syndemics?. Communicable Diseases Intelligence, 46. doi: 10.33321/cdi.2022.46.22
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Badman, S. G., Vallely, A. J., Pardo, C., Mhango, L. P., Cornall, A. M., Kaldor, J. K. and Whiley, D. (2021). A comparison of ThinPrep against four non-volatile transport media for HPV testing at or near the point of care. Pathology, 53 (2), 264-266. doi: 10.1016/j.pathol.2020.10.006
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Bell, Stephen, Ward, James, Aggleton, Peter, Murray, Walbira, Silver, Bronwyn, Lockyer, Andrew, Ferguson, Tellisa, Fairley, Christopher K., Whiley, David, Ryder, Nathan, Donovan, Basil, Guy, Rebecca, Kaldor, John and Maher, Lisa (2020). Young Aboriginal people's sexual health risk reduction strategies: a qualitative study in remote Australia. Sexual Health, 17 (4), 303-310. doi: 10.1071/SH19204
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Fifer, Helen, Hughes, Gwenda, Whiley, David and Lahra, Monica M (2020). Lessons learnt from ceftriaxone-resistant gonorrhoea in the UK and Australia. The Lancet Infectious Diseases, 20 (3), 276-278. doi: 10.1016/S1473-3099(20)30055-4
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Whiley, David M., Ye, Suifang, Tozer, Sarah, Clark, Julia E., Bletchly, Cheryl, Lambert, Stephen B., Grimwood, Keith and Nimmo, Graeme R. (2019). Over-diagnosis of rotavirus infection in infants due to detection of vaccine virus. Clinical Infectious Diseases, 71 (5), 1324-1326. doi: 10.1093/cid/ciz1196
Buckley, Cameron, Beatson, Scott A., Limnios, Athena, Lahra, Monica M., Whiley, David M. and Forde, Brian M. (2019). Whole-genome sequencing as an improved means of investigating Neisseria gonorrhoeae treatment failures. Sexual Health, 16 (5), 500-507. doi: 10.1071/SH19012
Chen, Marcus Y., McNulty, Anna, Avery, Ann, Whiley, David, Tabrizi, Sepehr N., Hardy, Dwight, Das, Anita F., Nenninger, Ashley, Fairley, Christopher K., Hocking, Jane S., Bradshaw, Catriona S., Donovan, Basil, Howden, Benjamin P. and Oldach, David (2019). Solithromycin versus ceftriaxone plus azithromycin for the treatment of uncomplicated genital gonorrhoea (SOLITAIRE-U): a randomised phase 3 non-inferiority trial. The Lancet Infectious Diseases, 19 (8), 833-842. doi: 10.1016/S1473-3099(19)30116-1
Hanrahan, Jane K., Hogan, Tiffany R., Buckley, Cameron, Trembizki, Ella, Mitchell, Hazel, Lau, Colleen L., Whiley, David M. and Lahra, Monica M. (2019). Emergence and spread of ciprofloxacin-resistant Neisseria gonorrhoeae in New South Wales, Australia: lessons from history. Journal of Antimicrobial Chemotherapy, 74 (8), 2214-2219. doi: 10.1093/jac/dkz182
Sweeney, Emma L., Bletchly, Cheryl, Gupta, Rita and Whiley, David M. (2019). False-negative Chlamydia polymerase chain reaction result caused by a cryptic plasmid-deficient Chlamydia trachomatis strain in Australia. Sexual Health, 16 (4), 394-396. doi: 10.1071/sh18205
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Huang, Bixing, Jennsion, Amy, Whiley, David, McMahon, Jamie, Hewitson, Glen, Graham, Rikki, De Jong, Amanda and Warrilow, David (2019). Illumina sequencing of clinical samples for virus detection in a public health laboratory. Scientific Reports, 9 (1) 5409, 5409. doi: 10.1038/s41598-019-41830-w
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Regan, David G., Hui, Ben B., Wood, James G., Fifer, Helen, Lahra, Monica M. and Whiley, David M. (2018). Treatment for pharyngeal gonorrhoea under threat. Lancet Infectious Diseases, 18 (11), 1175-1177. doi: 10.1016/S1473-3099(18)30610-8
Forde, Brian M., Zowawi, Hosam M., Harris, Patrick N. A., Roberts, Leah, Ibrahim, Emad, Shaikh, Nissar, Deshmukh, Anand, Sid Ahmed, Mazen A., Al Maslamani, Muna, Cottrell, Kyra, Trembizki, Ella, Sundac, Lana, Yu, Heidi H., Li, Jian, Schembri, Mark A., Whiley, David M., Paterson, David L. and Beatson, Scott A. (2018). Discovery of mcr-1-mediated colistin resistance in a highly virulent Escherichia coli lineage. mSphere, 3 (5) e00486-18. doi: 10.1128/msphere.00486-18
Guy, Rebecca J., Ward, James, Causer, Louise M., Natoli, Lisa, Badman, Steven G., Tangey, Annie, Hengel, Belinda, Wand, Handan, Whiley, David, Tabrizi, Sepehr N., Shephard, Mark, Fairley, Christopher K., Donovan, Basil, Anderson, David A., Regan, David G., Maher, Lisa and Kaldor, John M. (2018). Molecular point-of-care testing for chlamydia and gonorrhoea in Indigenous Australians attending remote primary health services (TTANGO): a cluster-randomised, controlled, crossover trial. The Lancet Infectious Diseases, 18 (10), 1117-1126. doi: 10.1016/S1473-3099(18)30429-8
Wee, Bryan A., Tai, Anna S., Sherrard, Laura J., Ben Zakour, Nouri L., Hanks, Kirt R., Kidd, Timothy J., Ramsay, Kay A., Lamont, Iain, Whiley, David M., Bell, Scott C. and Beatson, Scott A. (2018). Whole genome sequencing reveals the emergence of a Pseudomonas aeruginosa shared strain sub-lineage among patients treated within a single cystic fibrosis centre. BMC Genomics, 19 (1) 644, 644. doi: 10.1186/s12864-018-5018-x
Whiley, David M., Mhango, Lebogang, Jennison, Amy V., Nimmo, Graeme and Lahra, Monica M. (2018). Direct detection of penA gene associated with Ceftriaxone-resistant Neisseria gonorrhoeae FC428 strain by using PCR. Emerging Infectious Diseases, 24 (8), 1573-1575. doi: 10.3201/eid2408.180295
Whiley, David M., Jennison, Amy, Pearson, Julie and Lahra, Monica M. (2018). Genetic characterisation of Neisseria gonorrhoeae resistant to both ceftriaxone and azithromycin. The Lancet Infectious Diseases, 18 (7), 717-718. doi: 10.1016/S1473-3099(18)30340-2
Causer, Louise M, Guy, Rebecca J, Tabrizi, Sepehr N, Whiley, David M, Speers, David John, Ward, James, Tangey, Annie, Badman, Steven G, Hengel, Belinda, Natoli, Lisa Jane, Anderson, David A, Wand, Handan, Wilson, David, Regan, David G, Shephard, Mark, Donovan, Basil, Fairley, Christopher K and Kaldor, John M (2018). Molecular test for chlamydia and gonorrhoea used at point of care in remote primary healthcare settings: a diagnostic test evaluation. Sexually Transmitted Infections, 94 (5), 340-345. doi: 10.1136/sextrans-2017-053443
Zowawi, Hosam M., Syrmis, Melanie W., Kidd, Timothy J., Balkhy, Hanan H., Walsh, Timothy R., Al Johani, Sameera M., Al Jindan, Reem Y., Alfaresi, Mubarak, Ibrahim, Emad, Al-Jardani, Amina, Al Salman, Jameela, Dashti, Ali A., Sidjabat, Hanna E., Baz, Omar, Trembizki, Ella, Whiley, David M. and Paterson, David L. (2018). Identification of carbapenem-resistant Pseudomonas aeruginosa in selected hospitals of the Gulf Cooperation Council States: dominance of high-risk clones in the region. Journal of Medical Microbiology, 67 (6) 000730, 846-853. doi: 10.1099/jmm.0.000730
Giffard, Philip M., Andersson, Patiyan, Wilson, Judith, Buckley, Cameron, Lilliebridge, Rachael, Harris, Tegan M., Kleinecke, Mariana, O'Grady, Kerry-Ann F., Huston, Wilhelmina M., Lambert, Stephen B., Whiley, David M. and Holt, Deborah C. (2018). CtGEM typing: Discrimination of Chlamydia trachomatis ocular and urogenital strains and major evolutionary lineages by high resolution melting analysis of two amplified DNA fragments. PloS One, 13 (4) e0195454, e0195454. doi: 10.1371/journal.pone.0195454
Lahra, Monica M., Martin, Irene, Demczuk, Walter, Jennison, Amy V., Lee, Ken-Ichi, Nakayama, Shu-Ichi, Lefebvre, Brigitte, Longtin, Jean, Ward, Alison, Mulvey, Michael R., Wi, Teodora, Ohnishi, Makoto and Whiley, David (2018). Cooperative recognition of internationally disseminated ceftriaxone-resistant Neisseria gonorrhoeae strain. Emerging Infectious Diseases, 24 (4), 735-740. doi: 10.3201/eid2404.171873
Brischetto, Anna, Gassiep, Ian, Whiley, David and Norton, Robert (2018). Retrospective review of Treponema pallidum PCR and serology results: Are both tests necessary?. Journal of Clinical Microbiology, 56 (5) e01782-17, e01782-17. doi: 10.1128/JCM.01782-17
Buckley, Cameron, Forde, Brian M., Trembizki, Ella, Lahra, Monica M., Beatson, Scott A. and Whiley, David M. (2018). Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia. Scientific Reports, 8 (1) 1503, 1-7. doi: 10.1038/s41598-018-20015-x
Whiley, David M., Kundu, Ratan L., Jennison, Amy V., Buckley, Cameron, Limnios, Athena, Hogan, Tiffany, Enriquez, Rodney, El Nasser, Jasmin, George, C Robert and Lahra, Monica M. (2018). Azithromycin-resistant Neisseria gonorrhoeae spreading amongst men who have sex with men (MSM) and heterosexuals in New South Wales, Australia, 2017. The Journal of Antimicrobial Chemotherapy, 73 (5), 1242-1246. doi: 10.1093/jac/dky017
Badman, S. G., Causer, L. M., Guy, R., Wand, H., Donovan, B., Tabrizi, S. N., Speers, D., Shephard, M. D., Vallely, A., Whiley, D. and TTANGO investigators (2018). A reliable and easy to transport quality control method for chlamydia and gonorrhoea molecular point of care testing. Pathology, 50 (3), 317-321. doi: 10.1016/j.pathol.2017.09.012
Sarna, Mohinder, Lambert, Stephen B., Sloots, Theo P., Whiley, David M., Alsaleh, Asma, Mhango, Lebogang, Bialasiewicz, Seweryn, Wang, David, Nissen, Michael D., Grimwood, Keith and Ware, Robert S. (2017). Viruses causing lower respiratory symptoms in young children: findings from the ORChID birth cohort. Thorax, 73 (10), thoraxjnl-2017. doi: 10.1136/thoraxjnl-2017-210233
Ye, Suifang, Whiley, David M., Ware, Robert S., Kirkwood, Carl D., Lambert, Stephen B. and Grimwood, Keith (2017). Multivalent rotavirus vaccine and wild-type rotavirus strain shedding in Australian infants: a birth cohort study. Clinical Infectious Diseases , 66 (9), 1411-1418. doi: 10.1093/cid/cix1022
Tai, Anna S., Sherrard, Laura J., Kidd, Timothy J., Ramsay, Kay A., Buckley, Cameron, Syrmis, Melanie, Grimwood, Keith, Bell, Scott C. and Whiley, David M. (2017). Antibiotic perturbation of mixed-strain Pseudomonas aeruginosa infection in patients with cystic fibrosis. BMC pulmonary medicine, 17 (1) 138, 1-10. doi: 10.1186/s12890-017-0482-7
Lahra, Monica M., George, C. R. Robert and Whiley, David M. (2017). The Australian Gonococcal Surveillance Programme 1979-2017. Microbiology Australia, 38 (4), 175-179. doi: 10.1071/MA17062
Trembizki, Ella, Buckley, Cameron, Bletchly, Cheryl, Nimmo, Graeme R. and Whiley, David M. (2017). High levels of macrolide-resistant Mycoplasma genitalium in Queensland, Australia. Journal of Medical Microbiology, 66 (10) 000584, 1451-1453. doi: 10.1099/jmm.0.000584
Whiley, David M., Trembizki, Ella, Buckley, Cameron, Freeman, Kevin, Baird, Robert W., Beaman, Miles, Chen, Marcus, Donovan, Basil, Kundu, Ratan L., Fairley, Christopher K., Guy, Rebecca, Hogan, Tiffany, Kaldor, John M., Karimi, Mahdad, Limnios, Athena, Regan, David G., Ryder, Nathan, Su, Jiunn-Yih, Ward, James and Lahra, Monica M. (2017). Molecular antimicrobial resistance surveillance for Neisseria gonorrhoeae, Northern Territory, Australia. Emerging Infectious Diseases, 23 (9), 1478-1485. doi: 10.3201/eid2309.170427
Chow, Eric P. F., Walker, Sandra, Hocking, Jane S., Bradsha, Catriona S., Chen, Marcus Y., Tabrizi, Sepehr N., Howden, Benjamin P., Law, Matthew G., Maddaford, Kate, Read, Tim R. H., Lewis, David A., Whiley, David M., Zhang, Lei, Grulich, Andrew E., Kaldor, John M., Cornelisse, Vincent J., Phillips, Samuel, Donovan, Basil, McNulty, Anna M., Templeto, David J., Roth, Norman, Moore, Richard and Fairley, Christopher K. (2017). A multicentre double-blind randomised controlled trial evaluating the efficacy of daily use of antibacterial mouthwash against oropharyngeal gonorrhoea among men who have sex with men: the OMEGA (Oral Mouthwash use to Eradicate GonorrhoeA) study protocol. BMC Infectious Diseases, 17 (1) 456, 456. doi: 10.1186/s12879-017-2541-3
Ye, Suifang, Whiley, David M., Ware, Robert S., Sloots, Theo P., Kirkwood, Carl D., Grimwood, Keith and Lambert, Stephen B. (2017). Detection of viruses in weekly stool specimens collected during the first 2 years of life: a pilot study of five healthy Australian infants in the rotavirus vaccine era. Journal of Medical Virology, 89 (5), 917-921. doi: 10.1002/jmv.24716
Demczuk, W., Sidhu, S., Unemo, M., Whiley, D. M., Allen, V. G., Dillon, J. R., Cole, M., Seah, C., Trembizki, E., Trees, D. L., Kersh, E. N., Abrams, A. J., de Vries, H. J. C., van Dam, A. P., Medina, I., Bharat, A., Mulvey, M. R., Van Domselaar, G. and Martin, I. (2017). Neisseria gonorrhoeae sequence typing for antimicrobial resistance, a novel antimicrobial resistance multilocus typing scheme for tracking global dissemination of N. Gonorrhoeae strains. Journal of Clinical Microbiology, 55 (5), 1454-1468. doi: 10.1128/JCM.00100-17
O'Grady, Kerry-Ann F., Grimwood, Keith, Toombs, Maree, Sloots, Theo P., Otim, Michael, Whiley, David, Anderson, Jennie, Rablin, Sheree, Torzillo, Paul J., Buntain, Helen, Connor, Anne, Adsett, Don, Meng Kar, Oon and Chang, Anne B. (2017). Effectiveness of a cough management algorithm at the transitional phase from acute to chronic cough in Australian children aged <15 years: protocol for a randomised controlled trial. BMJ Open, 7 (3) e013796, e013796. doi: 10.1136/bmjopen-2016-013796
O'Grady, Kerry-Ann F., Grimwood, Keith, Sloots, Theo P., Whiley, David M., Acworth, Jason P., Phillips, Natalie, Marchant, Julie, Goyal, Vikas and Chang, Anne B. (2017). Upper airway viruses and bacteria and clinical outcomes in children with cough. Pediatric Pulmonology, 52 (3), 373-381. doi: 10.1002/ppul.23527
Lahra, Monica M., Trembizki, Ella, Buckley, Cameron, Donovan, Basil, Chen, Marcus, Guy, Rebecca, Kundu, Ratan L., Regan, David G. and Whiley, David M. (2017). Changes in the rates of Neisseria gonorrhoeae antimicrobial resistance are primarily driven by dynamic fluctuations in common gonococcal genotypes. Journal of Antimicrobial Chemotherapy, 72 (3), 705-711. doi: 10.1093/jac/dkw452
Sherrard, Laura J., Tai, Anna S., Wee, Bryan A., Ramsay, Kay A., Kidd, Timothy J., Ben Zakour, Nouri L., Whiley, David M., Beatson, Scott A. and Bell, Scott C. (2017). Within-host whole genome analysis of an antibiotic resistant Pseudomonas aeruginosa strain sub-type in cystic fibrosis. PLoS One, 12 (3) e0172179, e0172179.1-e0172179.15. doi: 10.1371/journal.pone.0172179
Goire, Namraj, Kundu, Ratan, Trembizki, Ella, Buckley, Cameron, Hogan, Tiffany R., Lewis, David A., Branley, James M., Whiley, David M. and Lahra, Monica M. (2017). Mixed gonococcal infections in a high-risk population, Sydney, Australia 2015: implications for antimicrobial resistance surveillance?. Journal of Antimicrobial Chemotherapy, 72 (2), 407-409. doi: 10.1093/jac/dkw406
Lahra, Monica M., Ward, Alison, Trembizki, Ella, Hermanson, Jamie, Clements, Emma, Lawrence, Andrew and Whiley, David (2017). Treatment guidelines after an outbreak of azithromycin-resistant Neisseria gonorrhoeae in South Australia. Lancet Infectious Diseases, 17 (2), 133-134. doi: 10.1016/S1473-3099(17)30007-5
Trembizki, Ella, Wand, Handan, Donovan, Basil, Chen, Marcus, Fairley, Christopher K., Freeman, Kevin, Guy, Rebecca, Kaldor, John M., Lahra, Monica M., Lawrence, Andrew, Lau, Colleen, Pearson, Julie, Regan, David G., Ryder, Nathan, Smith, Helen, Stevens, Kerrie, Su, Jiunn-Yih, Ward, James and Whiley, David M. (2016). The molecular epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in Australia: a nationwide cross-sectional study, 2012. Clinical Infectious Diseases, 63 (12), 1591-1598. doi: 10.1093/cid/ciw648
Sarna, Mohinder, Alsaleh, Asma, Lambert, Stephen B., Ware, Robert S., Mhango, Lebogang P., Mackay, Ian M., Whiley, David M., Sloots, Theo P. and Grimwood, Keith (2016). Respiratory viruses in neonates: a prospective, community-based birth cohort study. Pediatric Infectious Disease Journal, 35 (12), 1355-1357. doi: 10.1097/INF.0000000000001316
Lahra, Monica M., Dillon, Jo-Anne R., George, C. R. Robert, Lewis, David A., Wi, Teodora E. and Whiley, David M. (2016). From zero to zero in 100 years: gonococcal antimicrobial resistance. Microbiology Australia, 37 (4), 173-176. doi: 10.1071/MA16058
Hui, Ben B., Whiley, David M., Donovan, Basil, Law, Matthew G., Regan, David G., Chen, Marcus, Guy, Rebecca and Lahra, Monica (2016). Identifying factors that lead to the persistence of imported gonorrhoeae strains: a modelling study. Sexually Transmitted Infections, 93 (3), 221-225. doi: 10.1136/sextrans-2016-052738
Trembizki, Ella, Guy, Rebecca, Donovan, Basil, Kaldor, John M., Lahra, Monica M. and Whiley, David M. (2016). Further evidence to support the individualised treatment of gonorrhoea with ciprofloxacin. Lancet Infectious Diseases, 16 (9), 1005-1006. doi: 10.1016/S1473-3099(16)30271-7
Buckley, Cameron, Trembizki, Ella, Donovan, Basil, Chen, Marcus, Freeman, Kevin, Guy, Rebecca, Lahra, Monica M., Kundu, Ratan L., Regan, David G., Smith, Helen V. and Whiley, David M. (2016). Real-time PCR detection of Neisseria gonorrhoeae susceptibility to penicillin. Journal of Antimicrobial Chemotherapy, 71 (11) dkw291, 3090-3095. doi: 10.1093/jac/dkw291
Badman, Steven G., Vallely, Lisa M., Toliman, Pamela, Kariwiga, Grace, Lote, Bomesina, Pomat, William, Holmer, Caroline, Guy, Rebecca, Luchters, Stanley, Morgan, Chris, Garland, Suzanne M., Tabrizi, Sepehr, Whiley, David, Rogerson, Stephen J., Mola, Glen, Wand, Handan, Donovan, Basil, Causer, Louise, Kaldor, John and Vallely, Andrew (2016). A novel point-of-care testing strategy for sexually transmitted infections among pregnant women in high-burden settings: results of a feasibility study in Papua New Guinea. BMC Infectious Diseases, 16 (250) 250, 1-6. doi: 10.1186/s12879-016-1573-4
O'Grady, K. F., Grimwood, K., Sloots, T. P., Whiley, D. M., Acworth, J. P., Phillips, N., Goyal, V. and Chang, A. B. (2016). Prevalence, codetection and seasonal distribution of upper airway viruses and bacteria in children with acute respiratory illnesses with cough as a symptom. Clinical Microbiology and Infection, 22 (6), 527-534. doi: 10.1016/j.cmi.2016.02.004
Badman, S. G., Causer, L. M., Guy, R., Tabrizi, S. N., Francis, F., Donovan, B. and Whiley, D. (2015). A preliminary evaluation of a new GeneXpert (Gx) molecular point-of-care test for the detection of Trichomonas vaginalis. Sexually Transmitted Infections, 92 (5), 350-U117. doi: 10.1136/sextrans-2015-052384
Tai, Anna Sze, Bell, Scott Cameron, Kidd, Timothy James, Trembizki, Ella, Buckley, Cameron, Ramsay, Kay Annette, David, Michael, Wainwright, Claire Elizabeth, Grimwood, Keith and Whiley, David Mark (2015). Genotypic Diversity within a Single Pseudomonas aeruginosa Strain Commonly Shared by Australian Patients with Cystic Fibrosis. Plos One, 10 (12) e0144022, e0144022. doi: 10.1371/journal.pone.0144022
Natoli, Lisa, Guy, Rebecca J., Shephard, Mark, Causer, Louise, Badman, Steven G., Hengel, Belinda, Tangey, Annie, Ward, James, Coburn, Tony, Anderson, David, Kaldor, John, Maher, Lisa, Donovan, Basil, Wilson, David, Regan, David, Wand, Handan, Whiley, David, Tabrizi, Sepehr N. and Fairley, Christopher (2015). "I do feel like a scientist at times": a qualitative study of the acceptability of molecular point-of-care testing for chlamydia and gonorrhoea to primary care professionals in a remote high STI burden setting. PLoS ONE, 10 (12) e0145993, e0145993. doi: 10.1371/journal.pone.0145993
Buckley, Cameron, Trembizki, Ella, Donovan, Basil, Chen, Marcus, Freeman, Kevin, Guy, Rebecca, Kundu, Ratan, Lahra, Monica M., Regan, David G., Smith, Helen and Whiley, David M. (2015). A real-time PCR assay for direct characterization of the Neisseria gonorrhoeae GyrA 91 locus associated with ciprofloxacin susceptibility. Journal of Antimicrobial Chemotherapy, 71 (2) dkv366, 353-356. doi: 10.1093/jac/dkv366
Bissessor, M., Whiley, D.M., Lee, D.M., Snow, A.F., Fairley, C.K., Peel, J., Bradshaw, C.S., Hocking, J.S., Lahra, M.M. and Chen, M.Y. (2015). Detection of neisseria gonorrhoeae isolates from tonsils and posterior oropharynx. Journal of Clinical Microbiology, 53 (11), 3624-3626. doi: 10.1128/JCM.01647-15
Trembizki, Ella, Buckley, Cameron, Donovan, Basil, Chen, Marcus, Guy, Rebecca, Kaldor, John, Lahra, Monica M., Regan, David G., Smith, Helen, Ward, James and Whiley, David M. (2015). Direct real-time PCR-based detection of Neisseria gonorrhoeae 23S rRNA mutations associated with azithromycin resistance. Journal of Antimicrobial Chemotherapy, 70 (12), 3244-3249. doi: 10.1093/jac/dkv274
Buckley, Cameron, Trembizki, Ella, Baird, Robert W., Chen, Marcus, Donovan, Basil, Freeman, Kevin, Goire, Namraj, Guy, Rebecca, Lahra, Monica M., Regan, David, Whiley, David M. and GRAND study investigators (2015). Multitarget PCR assay for direct detection of penicillinase-producing neisseria gonorrhoeae for enhanced surveillance of gonococcal antimicrobial resistance. Journal of Clinical Microbiology, 53 (8), 2706-2708. doi: 10.1128/JCM.00540-15
Hui, Ben B., Ryder, Nathan, Su, Jiunn-Yih, Ward, James, Chen, Marcus Y., Donovan, Basil, Fairley, Christopher K., Guy, Rebecca J., Lahra, Monica M., Law, Mathew G., Whiley, David M. and Regan, David G. (2015). Exploring the benefits of molecular testing for gonorrhoea antibiotic resistance surveillance in remote settings. PLoS One, 10 (7) e0133202, 1-14. doi: 10.1371/journal.pone.0133202
Trembizki, Ella, Doyle, Christine, Buckley, Cameron, Jennison, Amy, Smith, Helen, Bates, John, Sloots, Theo, Nissen, Michael, Lahra, Monica M. and Whiley, David (2015). Estimating the prevalence of mixed-type gonococcal infections in Queensland, Australia. Sexual Health, 12 (5), 439-444. doi: 10.1071/SH15009
Syrmis, Melanie W., Pandey, Sushi, Tolson, Carla, Carter, Robyn, Congdon, Jake, Sloots, Theo, Coulter, Christopher and Whiley, David (2015). Identification of Mycobacterium abscessus complex and M. abscessus subsp massiliense culture isolates by real-time assays. Journal of Medical Microbiology, 64 (7), 790-794. doi: 10.1099/jmm.0.000085
Natoli, L., Guy, R. J., Shephard, M., Whiley, D., Tabrizi, S. N., Ward, J., Regan, D. G., Badman, S. G., Anderson, D. A., Kaldor, J. and Maher, L. (2015). Public health implications of molecular point-of-care testing for chlamydia and gonorrhoea in remote primary care services in Australia: a qualitative study. BMJ Open, 5 (4) e006922, 1-8. doi: 10.1136/bmjopen-2014-006922
Tai, Anna S., Sidjabat, Hanna E., Kidd, Timothy J., Whiley, David M., Paterson, David L. and Bell, Scott C. (2015). Evaluation of phenotypic screening tests for carbapenemase production in Pseudomonas aeruginosa from patients with cystic fibrosis. Journal of Microbiological Methods, 111, 105-107. doi: 10.1016/j.mimet.2015.02.006
Trembizki, Ella, Costa, Anna-Maria G., Tabrizi, Sepehr N., Whiley, David M. and Twin, Jimmy (2015). Opportunities and pitfalls of molecular testing for detecting sexually transmitted pathogens. Pathology, 47 (3), 219-226. doi: 10.1097/PAT.0000000000000239
Nicol, Mackenzie, Whiley, David, Nulsen, Mary and Bromhead, Collette (2015). Direct detection of markers associated with Neisseria gonorrhoeae antimicrobial resistance in New Zealand using residual DNA from the Cobas 4800 CT/NG NAAT assay. Sexually Transmitted Infections, 91 (2), 91-93. doi: 10.1136/sextrans-2014-051632
Whiley, David M. and Lahra, Monica M. (2015). Review of 2005 Public Health Laboratory Network Neisseria Gonorrhoeae Nucleic Acid Amplification Tests Guidelines. Communicable Diseases Intelligence, 39 (1), E42-E45.
Bissessor, Melanie, Whiley, David M., Fairley, Christopher K., Bradshaw, Catriona S., Lee, David M., Snow, Anthony S., Lahra, Monica M., Hocking, Jane S. and Chen, Marcus Y. (2015). Persistence of Neisseria gonorrhoeae DNA following treatment for pharyngeal and rectal gonorrhea is influenced by antibiotic susceptibility and reinfection. Clinical Infectious Diseases, 60 (4), 557-563. doi: 10.1093/cid/ciu873
Tai, Anna S., Kidd, Timothy J., Whiley, David M., Ramsay, Kay A., Buckley, Cameron, Bell, Scott C., The ACPinCF Investigator Group and David, Michael (2015). Molecular surveillance for carbapenemase genes in carbapenem-resistant Pseudomonas aeruginosa in Australian patients with cystic fibrosis. Pathology, 47 (2), 156-160. doi: 10.1097/PAT.0000000000000216
Chow, Eric P.F., Tomnay, Jane, Fehler, Glenda, Whiley, David, Read, Tim R.H., Denham, Ian, Bradshaw, Catriona S., Chen, Marcus Y. and Fairley, Christopher K. (2015). Substantial increases in chlamydia and gonorrhea positivity unexplained by changes in individual-level sexual behaviors among men who have sex with men in an australian sexual health service from 2007 to 2013. Sexually Transmitted Diseases, 42 (2), 81-87. doi: 10.1097/OLQ.0000000000000232
Rockett, Rebecca J., Bialasiewicz, Seweryn, Mhango, Lebogang, Gaydon, Jane, Holding, Rebecca, Whiley, David M., Lambert, Stephen B., Ware, Robert S., Nissen, Michael D., Grimwood, Keith and Sloots, Theo P. (2015). Acquisition of human polyomaviruses in the first 18 months of life. Emerging Infectious Diseases, 21 (2), 365-367. doi: 10.3201/eid2102.141429
Whiley, David M., Lahra, Monica M. and Unemo, Magnus (2015). Prospects of untreatable gonorrhea and ways forward. Future Microbiology, 10 (3), 313-316. doi: 10.2217/FMB.14.138
Ye, S., Lambert, S. B., Grimwood, K., Roczo-Farkas, S., Nimmo, G. R., Sloots, T. P., Kirkwood, C. D. and Whiley, D. M. (2015). Comparison of test specificities of commercial antigen-based assays and in-house PCR methods for detection of rotavirus in stool specimens. Journal of Clinical Microbiology, 53 (1), 295-297. doi: 10.1128/JCM.02251-14
Chang, Anne B., Smith-Vaughan, Heidi, Sloots, Theo P., Valery, Patricia C., Whiley, David, Beissbarth, Jemima and Torzillo, Paul J. (2015). Upper airway viruses and bacteria detection in clinical pneumonia in a population with high nasal colonisation do not relate to clinical signs. Pneumonia, 6 (1), 48-56. doi: 10.15172/pneu.2015.6/636
Stevens, Kerrie, Zaia, Angelo, Tawil, Samantha, Bates, John, Hicks, Vicki, Whiley, David, Limnios, Athena, Lahra, Monica M. and Howden, Benjamin P. (2014). Neisseria gonorrhoeae isolates with high-level resistance to azithromycin in Australia. Journal of Antimicrobial Chemotherapy, 70 (4), 1267-1268. doi: 10.1093/jac/dku490
Whiley, David, Trembizki, Ella, Buckley, Cameron, Freeman, Kevin, Lawrence, Andrew, Limniosd, Athena, Pearson, Julie, Smith, Helen, Stevens, Kerrie and Lahrae, Monica M. (2014). Penicillinase-producing plasmid types in neisseria gonorrhoeae clinical isolates from Australia. Antimicrobial Agents and Chemotherapy, 58 (12), 7576-7578. doi: 10.1128/AAC.04120-14
Causer, Louise M, Hengel, Belinda, Natoli, Lisa, Tangey, Annie, Badman, Steven G, Tabrizi, Sepehr N, Whiley, David, Ward, James, Kaldor, John M and Guy, Rebecca J (2014). A field evaluation of a new molecular-based point-of-care test for chlamydia and gonorrhoea in remote Aboriginal health services in Australia. Sexual Health, 12 (1), 27-33. doi: 10.1071/SH14158
Lahra, Monica M., Ryder, Nathan and Whiley, David M. (2014). A New Multidrug-Resistant Strain of Neisseria gonorrhoeae in Australia. New England Journal of Medicine, 371 (19), 1850-1851. doi: 10.1056/NEJMc1408109
Whiley, David M., Mackay, Ian M., Nimmo, Graeme R., Sloots, Theo P. and Nissen, Michael D. (2014). Enhancing influenza diagnostics to catch a shifting target. Lancet Infectious Diseases, 14 (10), 923-923. doi: 10.1016/S1473-3099(14)70916-8
Trembizki, Ella, Buckley, Cameron, Lawrence, Andrew, Lahra, Monica and Whiley, David (2014). Characterization of a novel Neisseria gonorrhoeae penicillinase-producing plasmid isolated in Australia in 2012. Antimicrobial Agents and Chemotherapy, 58 (8), 4984-4985. doi: 10.1128/AAC.02993-14
Trembizki, Ella, Doyle, Christine, Jennison, Amy, Smith, Helen, Bates, John, Lahra, Monica and Whiley, David (2014). A Neisseria gonorrhoeae strain with a meningococcal mtrR sequence. Journal of Medical Microbiology, 63 (Part 8), 1113-115. doi: 10.1099/jmm.0.074286-0
Natoli, Lisa, Maher, Lisa, Shephard, Mark, Hengel, Belinda, Tangey, Annie, Badman, Steven G., Ward, James, Guy, Rebecca J., TTANGO Investigators and Whiley, David M. (2014). Point-of-care testing for chlamydia and gonorrhoea: implications for clinical practice. PLoS One, 9 (6) e100518, e100518. doi: 10.1371/journal.pone.0100518
Trembizki, Ella, Smith, Helen, Lahra, Monica M., Chen, Marcus, Donovan, Basil, Fairley, Christopher K., Guy, Rebecca, Kaldor, John, Regan, David, Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2014). High-throughput informative single nucleotide polymorphism-based typing of Neisseria gonorrhoeae using the Sequenom MassARRAY iPLEX platform. Journal of Antimicrobial Chemotherapy, 69 (6), 1526-1532. doi: 10.1093/jac/dkt544
Syrmis, Melanie W., Kidd, Timothy J., Moser, Ralf J., Ramsay, Kay A., Gibson, Kristen M., Anuj, Snehal, Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael, Sloots, Theo P. and Whiley, David M. (2014). A comparison of two informative SNP-based strategies for typing Pseudomonas aeruginosa isolates from patients with cystic fibrosis. BMC Infectious Diseases, 14 (1) 307, 307.1-307.8. doi: 10.1186/1471-2334-14-307
Lahra, Monica M., Donovan, Basil and Whiley, David M. (2014). Decreased susceptibility to cephalosporins among gonococci?. The Lancet Infectious Diseases, 14 (3), 186-186. doi: 10.1016/S1473-3099(14)70015-5
Alsaleh, Asma N., Whiley, David M., Bialasiewicz, Seweryn, Lambert, Stephen B., Ware, Robert S., Nissen, Michael D., Sloots, Theo P. and Grimwood, Keith (2014). Nasal swab samples and real-time polymerase chain reaction assays in community-based, longitudinal studies of respiratory viruses: the importance of sample integrity and quality control. BMC Infectious Diseases, 14 (1) 15, 15. doi: 10.1186/1471-2334-14-15
Trembizki, E., Lahra, M., Stevens, K., Freeman, K., Hogan, T., Hogg, G., Lawrence, A., Limnios, A., Pearson, J., Smith, H., Nissen, M., Sloots, T. and Whiley, D.M. (2014). A national quality assurance survey of Neisseria gonorrhoeae testing. Journal of Medical Microbiology, 63 (PART 1), 45-49. doi: 10.1099/jmm.0.065094-0
Goire, Namraj, Lahra, Monica M., Chen, Marcus, Donovan, Basil, Fairley, Christopher K., Guy, Rebecca, Kaldor, John, Regan, David, Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2014). Molecular approaches to enhance surveillance of gonococcal antimicrobial resistance. Nature Reviews Microbiology, 12 (3), 223-229. doi: 10.1038/nrmicro3217
Alsaleh, A.N., Grimwood, K., Sloots, T.P. and Whiley, D.M. (2014). A retrospective performance evaluation of an adenovirus real-time PCR assay. Journal of Medical Virology, 86 (5), 795-801. doi: 10.1002/jmv.23844
Hackett, H., Bialasiewicz, S., Jacob, K., Bletchly, C., Harrower, B., Nimmo, G.R., Nissen, M.D., Sloots, T.P. and Whiley, D.M. (2014). Screening for H7N9 influenza A by matrix gene-based real-time reverse-transcription PCR. Journal of Virological Methods, 195, 123-125. doi: 10.1016/j.jviromet.2013.10.016
Lahra, Monica M, Lo, Ying-Ru and Whiley, David M (2013). Gonococcal antimicrobial resistance in the Western Pacific Region. Sexually Transmitted Infections, 89 (SUPPL. 4), iv19-iv23. doi: 10.1136/sextrans-2012-050906
McCarthy, James S., Griffin, Paul M., Sekuloski, Silvana, Bright, A. Taylor, Rockett, Rebecca, Looke, David, Elliott, Suzanne, Whiley, David, Sloots, Theo, Winzeler, Elizabeth A. and Trenholme, Katharine R. (2013). Experimentally induced blood-stage plasmodium vivax infection in healthy volunteers. Journal of Infectious Diseases, 208 (10), 1688-1694. doi: 10.1093/infdis/jit394
O'Grady K.-A.F., Whiley D.M., Torzillo P.J., Sloots T.P. and Lambert S.B. (2013). Mailed versus frozen transport of nasal swabs for surveillance of respiratory bacteria in remote Indigenous communities in Australia. BMC Infectious Diseases, 13 (543) 543, 1-7. doi: 10.1186/1471-2334-13-543
Nimmo, Graeme R., Bergh, Haakon, Nakos, Jennifer, Whiley, David, Marquess, John, Huygens, Flavia and Paterson, David L. (2013). Replacement of healthcare-associated MRSA by community-associated MRSA in Queensland: confirmation by genotyping. Journal of Infection, 67 (5), 439-447. doi: 10.1016/j.jinf.2013.07.020
Mitchell, M., Rane, V., Fairley, C. K., Whiley, D. M., Bradshaw, C. S., Bissessor, M. and Chen, M. Y. (2013). Sampling technique is important for optimal isolation of pharyngeal gonorrhoea. Sexually Transmitted Infections, 89 (7), 557-560. doi: 10.1136/sextrans-2013-051077
Whiley, David, Trembizki, Ella, Syrmis, Melanie, Nakos, Jenny, Bletchly, Cheryl, Nissen, Michael, Nimmo, Graeme and Sloots, Theo P. (2013). High-throughput molecular typing of microbes using the Sequenom Massarray platform. Microbiology Australia, 34 (4), 175-177. doi: 10.1071/MA13058
Guy, R.J., Natoli, L., Ward, J., Causer, L., Hengel, B., Whiley, D., Tabrizi, S.N., Donovan, B., Fairley, C. K., Badman, S. B., Tangey, A., Wand, H., Shephard, M., Regan, D. G., Wilson, D., Anderson, D. and Kaldor, J. M. (2013). A randomised trial of point-of-care tests for chlamydia and gonorrhoea infections in remote Aboriginal communities: Test, Treat ANd GO- the " TTANGO" trial protocol. BMC Infectious Diseases, 13 (485) 485, 1-9. doi: 10.1186/1471-2334-13-485
Cox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013). Bordetella holmesii and pertussis diagnosis: authors' reply. Pathology, 45 (5), 532-532. doi: 10.1097/PAT.0b013e3283639c0d
Smith, Lucy Alexandra Watchirs, Hillman, Richard, Ward, James, Whiley, David M., Causer, Louise, Skov, Steven, Donovan, Basil, Kaldor, John and Guy, Rebecca (2013). Point-of-care tests for the diagnosis of Neisseria gonorrhoeae infection: a systematic review of operational and performance characteristics. Sexually Transmitted Infections, 89 (4), 320-326. doi: 10.1136/sextrans-2012-050656
Y. Chen, Marcus, Stevens, Kerrie, Tideman, Robin, Zaia, Angelo, Tomita, Takehiro, Fairley, Christopher K., Lahra, Monica, Whiley, David and Hogg, Geoff (2013). Failure of 500 mg of ceftriaxone to eradicate pharyngeal gonorrhoea, Australia. Journal of Antimicrobial Chemotherapy, 68 (6), 1445-1447. doi: 10.1093/jac/dkt017
Ye, S., Roczo-Farkas, S., Whiley, D. M., Lambert, S. B., Robson, J., Heney, C., Nimmo, G., Grimwood, K., Sloots, T. P. and Kirkwood, C. D. (2013). Evidence of false-positive results in a commercially available rotavirus assay in the vaccine era, Australia, 2011 to 2012. Eurosurveillance, 18 (21), 14-18. doi: 10.2807/ese.18.21.20483-en
Upton, Arlo, Bromhead, Collette and Whiley, David M. (2013). Neisseria gonorrhoeae false-positive result obtained from a pharyngeal swab by using the roche cobas 4800 CT/NG assay in New Zealand in 2012. Journal of Clinical Microbiology, 51 (5), 1609-1610. doi: 10.1128/JCM.00485-13
Rockett, Rebecca J., Sloots, Theo P., Bowes, Sharleen, O'Neill, Nicholas, Ye, Suifang, Robson, Jenny, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Bialasiewicz, Seweryn (2013). Detection of novel polyomaviruses, TSPyV, HPyV6, HPyV7, HPyV9 and MWPyV in feces, urine, blood, respiratory swabs and cerebrospinal fluid. PLoS ONE, 8 (5) e62764, e62764.1-e62764.9. doi: 10.1371/journal.pone.0062764
Bromhead, Collette, Miller, Amanda, Jones, Mark and Whiley, David (2013). Comparison of the cobas 4800 CT/NG test with culture for detecting neisseria gonorrhoeae in genital and nongenital specimens in a low-prevalence population in New Zealand. Journal of Clinical Microbiology, 51 (5), 1505-1509. doi: 10.1128/JCM.03223-12
Syrmis, Melanie W., Moser, Ralf J., Kidd, Timothy J., Hunt, Priscilla, Ramsay, Kay A., Bell, Scott C., Wainwright, Claire E., Grimwood, Keith, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). High-throughput single-nucleotide polymorphism-based typing of shared Pseudomonas aeruginosa strains in cystic fibrosis patients using the Sequenom iPLEX platform. Journal of Medical Microbiology, 62 (5), 734-740. doi: 10.1099/jmm.0.055905-0
Goire, N., Lahra, M. M., Ohnishi, M., Hogan, T., Liminios, A. E., Nissen, M. D., Sloots, T. P. and Whiley, D. M. (2013). Polymerase chain reaction-based screening for the ceftriaxone-resistant Neisseria gonorrhoeae F89 strain. Eurosurveillance, 18 (14), 18-23. doi: 10.2807/1560-7917.ES2013.18.14.20444
Whiley, David M., Goire, Namraj, Rahimi, Frashta, Lahra, Monica M., Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2013). Real-time PCR genotyping of Neisseria gonorrhoeae isolates using 14 informative single nucleotide polymorphisms on gonococcal housekeeping genes. Journal of Antimicrobial Chemotherapy, 68 (2) dks381, 322-328. doi: 10.1093/jac/dks381
Cox, Hannah C., Jacob, Kevin, Whiley, David M., Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2013). Further evidence that the IS481 target is suitable for real-time PCR detection of Bordetella pertussis. Pathology, 45 (2), 202-203. doi: 10.1097/PAT.0b013e32835cc2d7
Read, P.J., Limnios, E.A., McNulty, A., Whiley, D. and Lahra, M.M. (2013). One confirmed and one suspected case of pharyngeal gonorrhoea treatment failure following 500mg ceftriaxone in Sydney, Australia. Sexual Health, 10 (5), 460-462. doi: 10.1071/SH13077
Rahimi, Frashta, Goire, Namraj, Guy, Rebecca, Kaldor, John M., Ward, James, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2013). Direct urine polymerase chain reaction for chlamydia and gonorrhoea: a simple means of bringing high-throughput rapid testing to remote settings?. Sexual Health, 10 (4), 299-304. doi: 10.1071/SH12108
Lambert, Stephen Bernard, Ware, Robert S., Cook, Anne L., Maguire, Frances A., Whiley, David M,, Bialasiewicz, Seweryn, Mackay, Ian M, Wang, David, Sloots, Theo P., Nissen, Michael D. and Grimwood, Keith (2012). Observational Research in Childhood Infectious Diseases (ORChID): a dynamic birth cohort study. BMJ Open, 2 (6) e002134, e002134.1-e002134.7. doi: 10.1136/bmjopen-2012-002134
Whiley, David M., Goire, Namraj, Lahra, Monica M., Donovan, Basil, Limnios, Athena E., Nissen, Michael D. and Sloots, Theo P. (2012). The ticking time bomb: escalating antibiotic resistance in Neisseria gonorrhoeae is a public health disaster in waiting. Journal of Antimicrobial Chemotherapy, 67 (9) dks188, 2059-2061. doi: 10.1093/jac/dks188
Unemo, Magnus, Golparian, Daniel, Limnios, Athena, Whiley, David, Ohnishi, Makoto, Lahra, Monica M. and Tapsall, John W. (2012). In vitro activity of ertapenem versus ceftriaxone against Neisseria gonorrhoeae isolates with highly diverse ceftriaxone MIC values and effects of ceftriaxone resistance determinants: Ertapenem for treatment of gonorrhea?. Antimicrobial Agents and Chemotherapy, 56 (7), 3603-3609. doi: 10.1128/AAC.00326-12
Whiley, David M., Jacob, Kevin, Nakos, Jennifer, Bletchly, Cheryl, Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2012). Improved detection of genetic markers of antimicrobial resistance by hybridization probe-based melting curve analysis using primers to mask proximal mutations: Examples include the influenza H275Y substitution. Journal of Antimicrobial Chemotherapy, 67 (6) dks040, 1375-1379. doi: 10.1093/jac/dks040
Willner, Dana, Daly, Joshua, Whiley, David, Grimwood, Keith, Wainwright, Claire E. and Hugenholtz, Philip (2012). Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples. PLoS One, 7 (4) e34605, e34605.1-e34605.12. doi: 10.1371/journal.pone.0034605
Goire, Namraj, Ohnishi, Makoto, Limnios, Athena E., Lahra, Monica M., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). Enhanced gonococcal antimicrobial surveillance in the era of ceftriaxone resistance: A real-time PCR assay for direct detection of the Neisseria gonorrhoeae H041 strain. Journal of Antimicrobial Chemotherapy, 67 (4) dkr549, 902-905. doi: 10.1093/jac/dkr549
Lai, Richard, Liang, Fang, Pearson, Darnley, Barnett, Graeme, Whiley, David, Sloots, Theo, Barnard, Ross T. and Corrie, Simon R. (2012). PrimRglo: A multiplexable quantitative real-time polymerase chain reaction system for nucleic acid detection. Analytical Biochemistry, 422 (2), 89-95. doi: 10.1016/j.ab.2011.12.038
Goire, Namraj, Freeman, Kevin, Lambert, Stephen B., Nimmo, Graeme R., Limnios, Athena E., Lahra, Monica M., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2012). The influence of target population on nonculture-based detection of markers of Neisseria gonorrhoeae antimicrobial resistance. Sexual Health, 9 (5), 422-429. doi: 10.1071/SH12026
Syrmis, M. W., Moser, R. J., Whiley, D. M., Vaska, V., Coombs, G. W., Nissen, M. D., Sloots, T. P. and Nimmo, G. R. (2011). Comparison of a multiplexed MassARRAY system with real-time allele-specific PCR technology for genotyping of methicillin-resistant Staphylococcus aureus. Clinical Microbiology and Infection, 17 (12), 1804-1810. doi: 10.1111/j.1469-0691.2011.03521.x
Anuj, S. N., Whiley, D. M., Kidd, T. J., Ramsay, K. A., Bell, S. C., Syrmis, M. W., Grimwood, K., Wainwright, C. E., Nissen, M. D. and Sloots, T. P. (2011). Rapid single-nucleotide polymorphism-based identification of clonal Pseudomonas aeruginosa isolates from patients with cystic fibrosis by the use of real-time PCR and high-resolution melting curve analysis. Clinical Microbiology and Infection, 17 (9), 1403-1408. doi: 10.1111/j.1469-0691.2010.03439.x
Binks, Michael J., Cheng, Allen C., Smith-Vaughan, Heidi, Sloots, Theo, Nissen, Michael, Whiley, David, McDonnell, Joseph and Leach, Amanda J. (2011). Viral-bacterial co-infection in Australian Indigenous children with acute otitis media. BMC Infectious Diseases, 11 (161) 161, 1-8. doi: 10.1186/1471-2334-11-161
O'Grady, Kerry-Ann F., Torzillo, Paul J., Rockett, Rebecca J., Whiley, David M., Nissen, Michael D., Sloots, Theo P. and Lambert, Stephen B. (2011). Successful application of a simple transport method for the conduct of respiratory virus surveillance in remote Indigenous communities in Australia. Tropical Medicine and International Health, 16 (6), 766-772. doi: 10.1111/j.1365-3156.2011.02757.x
Whiley, D.M., Limnios, A., Moon, N.J., Gehrig, N., Goire, N., Hogan, T., Lam, A., Jacob, K., Lambert, S.B., Nissen, M.D. and Sloots, T.P. (2011). False-negative results using Neisseria gonorrhoeae porA pseudogene PCR - a clinical gonococcal isolate with an N. meningitidis porA sequence, Australia, March 2011. Eurosurveillance, 16 (21), 5-8. doi: 10.2807/ese.16.21.19874-en
Whiley, David M., Goire, Namraj, Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Tapsall, John W. (2011). Reduced susceptibility to ceftriaxone in Neisseria gonorrhoeae is spread internationally by genetically distinct gonococcal populations. Journal of Antimicrobial Chemotherapy, 66 (5) dkr052, 1186-1187. doi: 10.1093/jac/dkr052
Rockett, Rebecca J., Tozer, Sarah J., Peatey, Chris, Bialasiewicz, Seweryn, Whiley, David M., Nissen, Michael D., Trenholme, Katharine, Mc Carthy, James S. and Sloots, Theo P. (2011). A real-time, quantitative PCR method using hydrolysis probes for the monitoring of Plasmodium falciparum load in experimentally infected human volunteers. Malaria Journal, 10 (48) 48, 48-1-48-6. doi: 10.1186/1475-2875-10-48
Goire, Namraj, Freeman, Kevin, Tapsall, John W., Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2011). Enhancing gonococcal antimicrobial resistance surveillance: a real-time PCR assay for detection of penicillinase-producing Neisseria gonorrhoeae by use of noncultured clinical samples. Journal of clinical microbiology, 49 (2), 513-518. doi: 10.1128/JCM.02024-10
Whiley, David M., Jacobsson, Susanne, Tapsall, John W., Nissen, Michael D., Sloots, Theo P. and Unemo, Magnus (2010). Alterations of the pilQ gene in Neisseria gonorrhoeae are unlikely contributors to decreased susceptibility to ceftriaxone and cefixime in clinical gonococcal strains. Journal of Antimicrobial Chemotherapy, 65 (12) dkq377, 2543-2547. doi: 10.1093/jac/dkq377
Rockett, Rebecca, Goire, Namraj, Limnios, Athena, Turra, Mark, Higgens, Geoffrey, Lambert, Stephen B., Bletchly, Cheryl, Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2010). Evaluation of the cobas 4800 CT/NG test for detecting Chlamydia trachomatis and Neisseria gonorrhoeae. Sexually Transmitted Infections, 86 (6), 470-473. doi: 10.1136/sti.2010.042812
Whiley, David M., Goire, Namraj, Lambert, Stephen B., Ray, Sanghamitra, Limnios, E. Athena, Nissen, Michael D., Sloots, Theo P. and Tapsall, John W. (2010). Reduced susceptibility to ceftriaxone in neisseria gonorrhoeae is associated with mutations G542S, P551S and P551L in the gonococcal penicillin-binding protein 2. Journal of Antimicrobial Chemotherapy, 65 (8) dkq187, 1615-1618. doi: 10.1093/jac/dkq187
Whiley, David M., Faux, Cassandra E., Bialasiewicz, Seweryn, Gould, Allan R., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2010). A simple approach for preparing real-time PCR positive reaction controls for rare or emerging viruses. Journal of Clinical Virology, 48 (3), 193-197. doi: 10.1016/j.jcv.2010.03.022
Bialasiewicz, Seweryn, Rockett, Rebecca, Whiley, David W., Abed, Yacine, Allander, Tobias, Binks, Michael, Boivin, Guy, Cheng, Allen C., Chung, Ju-Young, Ferguson, Patricia E., Gilroy, Nicole M., Leach, Amanda J., Lindau, Cecilia, Rossen, John W., Sorrell, Tania C., Nissen, Michael D. and Sloots, Theo P. (2010). Whole-genome characterization and genotyping of global WU polyomavirus strains. Journal of Virology, 84 (12), 6229-6234. doi: 10.1128/JVI.02658-09
Rockett, Rebecca J., Bialasiewicz, Seweryn, Whiley, David M., Bletchly, Cheryl, Faux, Cassandra E., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theodorus P. (2009). A novel duplex real-time reverse transcription PCR Assay for the detection of influenza A and the novel influenza A(H1N1)strain.. Viruses, 1 (3), 1204-1208. doi: 10.3390/v1031204
Kugelman, Gayle, Tapsall, John W., Goire, Namraj, Syrmis, Melanie, Limnios, Athena, Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Whiley, David M. (2009). Simple, rapid, and inexpensive detection of Neisseria gonorrhoeae resistance mechanisms using heat-denatured isolates and SYBR green-based real-time PCR.. Antimicrobial Agents & Chemotherapy, 53 (10), 4211-4216. doi: 10.1128/AAC.00385-09
Goire, Namraj, Kattenbelt, Jacqueline A., Gould, Allan R., Nissen, Michael D., Sloots, Theo P. and Whiley, David (2009). An example of competitive inhibition in a monoplex real-time PCR as a cause of reduced fluorescent signal response. Pathology, 41 (6), 607-609. doi: 10.1080/00313020903071488
Whiley, David M., Goire, Namraj, Ray, E. Sanghamitra, Limnios, Althena, Lambert, Stephen B., Nissen, Michael D., Sloots, Theo P. and Tapsall, John W. (2009). Neisseria gonorrhoeae multi-antigen sequence typing using non-cultured clinical specimens.. Sexually Trasmitted Infections, 86 (1), 51-55. doi: 10.1136/sti.2009.037689
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Nissen, Michael D. and Sloots, Theo P. (2009). Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples. Journal of Clinical Virology, 45 (3), 249-254. doi: 10.1016/j.jcv.2009.05.002
Whiley, David M., Bialasiewicz, Seweryn, Bletchly, Cheryl, Faux, Cassandra E., Harrower, Bruce, Gould, Allan R., Lambert, Stephen B., Nimmo, Graeme R., Nissen, Michael D. and Sloots, Theo P. (2009). Detection of novel influenza A(H1N1) virus by real-time RT-PCR.. Journal of Clinical Virology, 45 (3), 203-204. doi: 10.1016/j.jcv.2009.05.032
Tapsall, John, Read, Phillip, Carmody, Christopher, Bourne, Christopher, Ray, Sanghamitra, Limnios, Athena, Sloots, Theo and Whiley, David (2009). Two cases of failed ceftriaxone treatment in pharyngeal gonorrhoea verified by molecular microbiological methods.. Journal of Medical Microbiology, 58 (5), 683-687. doi: 10.1099/jmm.0.007641-0
Bialasiewicz, S., Whiley, D. M., Buhrer-Skinner, M., Bautista, C., Barker, K., Aitken, S., Gordon, R., Muller, R., Lambert, S. B., Debattista, J., Nissen, M. D. and Sloots, T. P. (2009). A novel gel-based method for self collection and ambient temperature postal transport of urine for PCR detection of Chlamydia trachomatis.. Sexually Transmitted Infections, 85 (2), 102-105. doi: 10.1136/sti.2008.032607
Bialasiewicz, Seweryn, Lambert, Stephen B., Whiley, David M., Nissen, Michael D. and Sloots, Theo P. (2009). Merkel cell polyomavirus DNA in respiratory specimens from children and adults. Emerging Infectious Diseases, 15 (3), 492-494. doi: 10.3201/eid1503.081067
Tozer, Sarah J., Lambert, Stephen B., Whiley, David M., Bialasiewicz, Seweryn, Lyon, Michael J, Nissen, Michael D. and Sloots, Theo P. (2009). Detection of Human Bocavirus in respiratory, fecal and blood samples by real-time PCR. Journal of Medical Virology, 81 (3), 488-493. doi: 10.1002/jmv.21409
Anuj, Snehal N., Whiley, David M., Kidd, Timothy J., Bell, Scott C., Wainwright, Claire E., Nissen, Michael D. and Sloots, Theo P. (2009). Identification of Pseudomonas aeruginosa by a duplex real-time polymerase chain reaction assay targeting the ecfX and the gyrB genes. Diagnostic Microbiology And Infectious Disease, 63 (2), 127-131. doi: 10.1016/j.diagmicrobio.2008.09.018
Tozer, S., Whiley, D. M., Lunn, G., Rawlinson, W. D., Sammels, L. M., Sloots, T. P. and Nissen, M. D. (2008). Identification of Australian human respiratory syncytial virus strains containing a 60-nucleotide duplication within the G glycoprotein gene.. Pathology, 40 (6), 632-635. doi: 10.1080/00313020802320655
Lambert, Stephen B., Whiley, David M., O'Neill, Nicholas T., Andrews, Emily C., Canavan, Fiona M., Bletchly, Cheryl, Siebert, David J., Sloots, Theo P. and Nissen, Michael D. (2008). Comparing nose-throat swabs and nasopharyngeal aspirates collected from children with symptoms for respiratory virus identification using real-time polymerase chain reaction. Pediatrics, 122 (3), e615-e620. doi: 10.1542/peds.2008-0691
McNally, Leon P., Templeton, David J., Jin, Fengyi, Grulich, Andrew E., Donovan, Basil, Whiley, David M. and Cunningham, Philip H. (2008). Low positive predictive value of a nucleic acid amplification test for nongenital Neisseria gonorrhoeae infection in homosexual men. Clinical Infectious Diseases, 47 (2), e25-e27. doi: 10.1086/589299
Sloots, T. P., Whiley, D. M., Lambert, S. B. and Nissen, M. D. (2008). Emerging respiratory agents: New viruses for old diseases?. Journal of Clinical Virology, 42 (3), 233-243. doi: 10.1016/j.jcv.2008.03.002
Whiley, D. M., Lambert, S., Bialasiewicz, S., Goire, N., Nissen, M. D. and Sloots, T. P. (2008). False-Negative results in nucleic acid amplification tests: do we need to routinely use two genetic targets in all assays to overcome problems caused by sequence variation?. Critical Reviews in Microbiology, 34 (2), 71-76. doi: 10.1080/10408410801960913
Bialasiewicz, S., Whiley, D. M., Lambert, S. B., Jacob, K., Bletchly, C., Wang, D., Nissen, M. D. and Sloots, T. P. (2008). Presence of the newly discovered human polyomaviruses KI and WU in Australian patients with acute respiratory tract infection. Journal of Clinical Virology, 41 (2), 63-68. doi: 10.1016/j.jcv.2007.11.001
Goire, Namraj, Nissen, Michael D., LeCornec, Genevera M., Sloots, Theo P. and Whiley, David, M. (2008). A duplex Neisseria gonorrhoeae real-time polymerase chain reaction assay targeting the gonoccoccal porA pseudogene and multicopy opa genes. Diagnostic Microbiology and Infectious Disease, 61 (1), 6-12. doi: 10.1016/j.diagmicrobio.2007.12.007
Whiley, David M., Garland, Suzanne M., Harnett, Geoffrey, Lum, Gary, Smith, David W., Tabrizi, Sepehr N., Sloots, Theo P. and Tapsall, John W. (2008). Exploring 'best practice' for nucleic acid detection of Neisseria gonorrhoeae. Sexual Health, 5 (1), 17-23. doi: 10.1071/SH07050
Whiley, David M., Limnios, E. Athena, Ray, Sanghamitra, Sloots, Theo P. and Tapsall, John W. (2007). Diversity of penA alterations and subtypes in Neisseria gonorrhoeae strains from Sydney, Australia, that are less susceptible to ceftriaxone. Antimicrobial Agents And Chemotherapy, 51 (9), 3111-3116. doi: 10.1128/AAC.00306-07
Bialasiewicz, Seweryn, Whiley, David M., Lambert, Stephen B., Wang, David, Nissen, Michael D. and Sloots, Theo P. (2007). A newly reported human polyomavirus, KI virus, is present in the respiratory tract of Australian children. Journal of Clinical Virology, 40 (1), 15-18. doi: 10.1016/j.jcv.2007.07.001
Bialasiewicz, S., Whiley, D. M., Lambert, S. B., Gould, A., Nissen, M. D. and Sloots, T. P. (2007). Development and evaluation of real-time PCR assays for the detection of the newly identified KI and WU polyomaviruses. Journal of Clinical Virology, 40 (1), 9-14. doi: 10.1016/j.jcv.2007.07.015
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